Gracilaria vermiculophylla
(Male)
Near chromosome scale assembly
Description
- Genus: Gracilaria
- Species: vermiculophylla
- Strain: HapMaleFtJ-2017
- Sex: Male
- Ploidy: Haploid
- Common name: No common name known
Resources
- Genome browser ↵
- Genome database ↵
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
Assembly
- Sequencing: Illumina, HiC
- Size: 44.95 Mbp
- Number of scaffolds: 4240
- content: 49.4%
- N content: 7385%
- N50: 2.56 Mbp
- L50: 6
Annotation
- Protein-coding genes: 6807
- Gene length (average): 1750.55
- Gene length (median): 1154.0
- CDS length (average): 1351.84
- CDS length (median): 1085.0
- CDS proportion (genome): 20.21%
- Genes without introns: 5169
- Number of contigs with at least one gene (genome): 6.58%
- Number of contigs with at least one gene (bases): 96.21%
BUSCO results
Genome
- Single-copy genes: 166
- Duplicated genes: 2
- Fragmented genes: 23
- Missing genes: 64
Proteins
- Single-copy genes: 165
- Duplicated genes: 1
- Fragmented genes: 17
- Missing genes: 72