Tables describing the different organisms and their associated data using some common descriptors and metrics.
- Genome assemblies
- Structural annotations
- Structural annotations (BUSCO)
- Functionnal annotation (not yet available)
Genome assemblies metrics
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)
| Species | Sex | Ploidy | Sequencing | Assembly size | Number of scaffolds | GC content | N content | N50 | L50 |
|---|---|---|---|---|---|---|---|---|---|
Sequencing: Sanger
|
Gametophyte (male) | Haploid | Sanger | 100.12 Mbp | 926 | 52.8% | 8526% | 237.01 Kbp | 126 |
|
Gracilaria caudata
Sequencing: Illumina
Draft genome
|
Male | Haploid | Illumina | 30.28 Mbp | 5535 | 49.9% | 1282% | 20.84 Kbp | 396 |
|
Gracilaria chilensis
Sequencing: PacBio
Near chromosome scale assembly
|
Male | Haploid | PacBio | 76.07 Mbp | 138 | 48.9% | 0% | 1.56 Mbp | 18 |
|
Gracilaria gracilis
Sequencing: PacBio
Good quality assembly
|
Male | Haploid | PacBio | 72.49 Mbp | 279 | 49.6% | 0% | 562.98 Kbp | 38 |
|
Gracilaria vermiculophylla
Sequencing: Illumina, HiC
Near chromosome scale assembly
|
Male | Haploid | Illumina, HiC | 44.95 Mbp | 4240 | 49.4% | 7385% | 2.56 Mbp | 6 |
Structural annotations metrics
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)
| Species | Sex | Protein-coding genes | Exons per gene (mean | median) | CDS length (mean | median) | CDS percentage | Monoexonic genes | Contigs with at least one gene (percentage of genome | percentage of bases) | lncRNAs |
|---|---|---|---|---|---|---|---|---|
|
Chondrus crispus
Sequencing:
|
Gametophyte (male) | 9807 | 1.29 | 1.0 | 1051.1 | 774.0 | 9.81% | 8336 | 70.95% | 95.74% | Undetermined |
|
Gracilaria caudata
Sequencing: Illumina
Draft genome
|
Male | 8737 | 1.53 | 1.0 | 1273.29 | 1043.0 | 36.35% | 6231 | 34.2% | 86.77% | Undetermined |
|
Gracilaria chilensis
Sequencing: PacBio
Near chromosome scale assembly
|
Male | 7943 | 1.37 | 1.0 | 1334.23 | 1082.0 | 13.45% | 6079 | 53.62% | 95.51% | Undetermined |
|
Gracilaria gracilis
Sequencing: PacBio
Good quality assembly
|
Male | 9460 | 1.55 | 1.0 | 1324.22 | 1043.0 | 16.85% | 6680 | 77.41% | 96.7% | Undetermined |
|
Gracilaria vermiculophylla
Sequencing: Illumina, HiC
Near chromosome scale assembly
|
Male | 6807 | 1.4 | 1.0 | 1351.84 | 1085.0 | 20.21% | 5169 | 6.58% | 96.21% | Undetermined |
BUSCO metrics
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)
| Species | Sex | Single copy genes (genome) | Duplicated genes (genome) | Fragmented genes (genome) | Missing genes (genomes) | Single copy genes (proteome) | Duplicated genes (proteome) | Fragmented genes (proteome) | Missing genes (proteome) |
|---|---|---|---|---|---|---|---|---|---|
|
Chondrus crispus
Sequencing:
|
Gametophyte (male) | 224 | 8 | 24 | 47 | 224 | 8 | 24 | 47 |
|
Gracilaria caudata
Sequencing: Illumina
Draft genome
|
Male | 189 | 7 | 22 | 37 | 182 | 4 | 22 | 47 |
|
Gracilaria chilensis
Sequencing: PacBio
Near chromosome scale assembly
|
Male | 194 | 3 | 20 | 38 | 187 | 5 | 16 | 47 |
|
Gracilaria gracilis
Sequencing: PacBio
Good quality assembly
|
Male | 194 | 6 | 18 | 37 | 192 | 5 | 16 | 42 |
|
Gracilaria vermiculophylla
Sequencing: Illumina, HiC
Near chromosome scale assembly
|
Male | 166 | 2 | 23 | 64 | 165 | 1 | 17 | 72 |